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In this paper I present a case study of one student generating a series of explanations about how complex emergent systems work. This addresses a gap in how students actually can progress in understanding emergence. I show how one student’s explanations changed from a focus on centralized causality, which is associated with a common misconception, to having a focus on decentralized causality, which is associated with a relatively sophisticated understanding. In this case, his use of analogies and counter-evidence was noticed as his explanations shifted.