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Following research on using Modeling-based Learning (MbL) in kindergarten, in this case study we provide detailed descriptions of the implementation of MbL with a group of 24 kindergarten children studying heat transfer in a metal rod. Findings suggest that participating children successfully engaged in authentic MbL activities and developed several different types of models, as well as a variety of features of mechanistic reasoning. We use this evidence to argue that (a)different modeling tools may afford different learning opportunities; (b)kindergarten children have modeling resources that can use in order to utilize different MbL tools; and (c)different MbL tools may prevent or support children moving into a lower scalar lever of a more advanced mechanistic account of the phenomenon.