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Confirmatory factor analysis (CFA) using polychoric correlations has become standard in psychometric and item analyses. Nevertheless, issues such as sparse data can lead to non-positive definite (NPD) polychoric correlation matrices, posing notable challenges. Smoothing algorithms to address this issue can play important roles in eliminating noise, enhancing signal quality, and regularizing data. In the present paper, a series of simulation studies were conducted to compare the eigenvalue substitution smoothing method with Higham’s nearest correlation approach. It was found that although Higham’s correlation approach slightly outperforms the eigenvalue substitution method in terms of parameter bias, the converse was more efficient. Neither approach was particularly favorable at assessing fit. Recommendations for empirical data analysis and potential future avenues of research are discussed.