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While previous research has established a positive association between enjoyment and academic achievement in science, the complexity of this relationship across individual characteristics and contexts remains underexplored. Utilizing data from 9,764 students in B-S-J-G (China) from PISA 2015, this study adopted interpretable double machine learning approach to reveal significant heterogeneity in the enjoyment-achievement relationship. The results indicated the comprehensive moderators, such as student engagement, teaching environment, and ICT resources and use. The study proceeded with person-level analysis, identifying multiple groups of students with disparate enjoyment effects through interpretation of multi-feature interactions. Overall, the study reveals a more complex picture that extends beyond the basic tenets of early theories, and paves the way for more targeted and context-aware educational interventions.