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This study analyzes Singapore's digital PIRLS 2021 student data using machine learning methods to address three research questions. First, we applied a Collaborative Filtering algorithm to impute missing values in a sparse dataset, achieving reliable results with a high correlation (0.92) and R-squared value (0.85). Second, we trained an autoencoder to extract significant features from students’ process data, capturing patterns of test-taking behavior. Third, we used K-means clustering to classify students into five distinct groups based on these features. The results indicate clear distinctions in reading achievement among clusters, demonstrating that students' reading achievement has a significant relationship with their test-taking behavior. This showcases the effectiveness of our methods for meaningful analysis and interpretation.