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This study investigates how middle schoolers learn to integrate dynamically linked multiple representations and models (i.e. graph, mathematical equation, pendulum) of simple harmonic motion in an interactive web-based simulation interface designed to support embodied learning. We present two contrasting cases of integration: a “good integrator/learner”, and a “borderline/poor integrator/learner” as identified through a set of representational integration tasks. We analyze patterns of these students’ interaction with the simulation interface in terms of their visual and mouse-based navigation behavior. By mapping navigation behavior with their performance and reasoning in integration tasks, we identify potential sensorimotor markers of integration and learning with multiple representations in physics/science.