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This study investigates financial disparities among 1,619 U.S. public higher education institutions using 2004–2021 data from the Integrated Postsecondary Education Data System (IPEDS). Using a Linear Quantile Mixed Model, we find that tuition per student has risen much faster in flagship institutions—already starting with higher revenue—than in public four-year and two-year institutions. Within each type, high-tuition institutions show steeper increases than low-tuition peers. Retention rate gaps, however, have remained stable. These trends suggest that high-cost institutions face little pressure to limit tuition growth, potentially deepening educational inequality and socioeconomic stratification in a market-driven higher education system.