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This study proposes a model to take into account multiple membership partially nested (MM-PN) data, where some level-1 individuals are nested within level-2 groups and other level-1 individuals remain un-nested. Furthermore, a portion of the nested individuals also exhibit mobility among level-2 groups. The estimation of the proposed MM-PN model is compared to a partially nested (PN) model that ignores mobility. This modeling approach was demonstrated using a subset of the Early Childhood Longitudinal Study, Class of 2010-11 dataset to compare homeschooled and traditionally schooled students’ science achievement. Results revealed that parameter and SE estimates were consistent, with the exception of the level-2 variance component and level-2 covariate’s coefficient resulting in differences between the MM-PN model and the PN model.