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As generative artificial intelligence (GenAI) is increasingly integrated into engineering research, its influence on PhD graduates’ identity and career transitions remains underexamined. This longitudinal narrative inquiry, guided by the Identity-Trajectory framework, follows two representative engineering PhD graduates (2023—2025) as they navigate the transition to professional life. One graduate, supported by institutional resources and academic networks, reinforced a researcher identity and pursued an academic career. The other, facing identity disruption and limited support, shifted to industry. Their divergent paths illustrate how GenAI mediates identity development during a critical career phase. This study extends identity-trajectory theory in the context of GenAI and offers insight for rethinking doctoral and postdoctoral education amid changing research practices.