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The underrepresentation of women in research is well-documented, in everything from participation and leadership to peer-review and publication. Even so, in the first months of the COVID-19 pandemic, early reports indicated a precipitous decline in women’s scholarly productivity compared to pre-pandemic times. None of these studies, mainly from the Global North, provide detailed explanations for the decline in research outcomes. We offer the first comprehensive study to shed light on the complex reasons for the decline in research during the pandemic-enforced lockdown among 2,029 women academics drawn from 26 public universities in South Africa. Our study in short, finds that teaching and administration effectively displaced research productivity and publication—with serious implications for an already elusive gender equality in research.