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Unbiased estimation of average treatment effects in multilevel observational studies requires adjustment for pre-treatment individual-level and cluster-level characteristics. Although clusters such as classrooms and schools are typically imbalanced on pretreatment characteristics, much research in propensity score methods ignore cluster effects. This study presents the first deep learning model to successfully estimate generalized propensity scores (GPS) and estimate average dose response functions with the outcome model proposed by Hirano and Imbens (2004) for continuous treatments. In a Monte Carlo simulation study, we compare the estimation and inference of a random effects model, a fixed effects model, and a single-level model to a more flexible feedforward deep learning model.